PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_CE839571B.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 342aa    MW: 37342.4 Da    PI: 10.4877
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_CE839571B.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.37.5e-29273329358
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                            D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+ n 
  Traes_4BS_CE839571B.2 273 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGNANS 329
                            9*************************988************************9775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-19224269IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.7E-31259328IPR003657WRKY domain
PROSITE profilePS5081128.116266332IPR003657WRKY domain
SuperFamilySSF1182903.79E-24269326IPR003657WRKY domain
SMARTSM007742.5E-33271331IPR003657WRKY domain
PfamPF031067.3E-24273326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEEVEEANRM AVASCHRVLG LLTQTQDPAQ LRSIALGTDE ACAKFRKVVS LLGNGNEGGG  60
THPRAKLVSR RQTPGFLSQK SFLDNNTPVV VLNSAHPSTS SAQVYPRNSI LDSQPAHPIG  120
GLPKLVQPLS AHFQFGDSSR YNQFQQHQHQ QQKMRAEMFK RSNSGINLKF DSPSGTGTMS  180
SARSFMSSLS MDGSVASLDA KSSSFHLIGG PAMSDPVNAQ QAPRRRCSGR GEDGNGKCAA  240
TGRCHCSKRR KLRVKRTIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV  300
RGCPARKHVE RCVDDPSMLI VTYEGNANSP ALVDRLRCSP KL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-18264328770WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2486400.0AK248640.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf169m16, mRNA sequence.
GenBankAK3547760.0AK354776.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1011A24.
GenBankAK3758020.0AK375802.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3105H03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562250.10.0PREDICTED: protein WRKY1-like isoform X2
SwissprotQ93WU65e-86WRK74_ARATH; Probable WRKY transcription factor 74
SwissprotQ9SR075e-86WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLW5EDJ00.0W5EDJ0_WHEAT; Uncharacterized protein
STRINGMLOC_77258.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.17e-79WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]